rs254248032 SNP Detail

Summary

• ID
  rs254248032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30306014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGGAGA ACACAACTGT
  TGACTGGGGA CTGTCTCAGA TTGCTTGGGT GGAGGCATGC ACAAAGAAGA TGACAGGTGG
  CCTTGCTCCG CAAGAATACT GCTGCCATAC CTATTCCCTC CATCACCCCT CACCAAAACA
  AACAAACAAA CAAACAAACA AGCAAACAGA ACCCGACGCC CCGCACAAAC ATGGCTGCCA
  R
  CGCCGCAGTT GGCTTGCAGG CGGCAGCCGT TAGTGCGCAT GCTCCTCGGC GCCCCGCACC
  AAGATGGCCG CTGCCTCGGT CGGCGCGGCC GCCGCGAGAC GGCCGTTGGT GGGCATGCTC
  CCTGAGTGCC TCGCACCGGC ATGGCTGCCG CCTTCGCGCG AGTGACTGTA ATTCTCGGCT
  TCCGGTCCTA GCCAGTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353515406	MGP_WTSI_2_30271522	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254248032					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515406	MGP_WTSI_2_30271522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30306014 () rs orientation: forward

Symbol	Name	Function Class
Crat	carnitine acetyltransferase	412 bp upstream
Gm16323	predicted gene 16323	664 bp downstream
Ptpa	protein phosphatase 2 protein activator	48 bp upstream
Rr554311	regulatory region 554311	1614 bp distal
Rr554312	regulatory region 554312	489 bp distal
Rr554313	regulatory region 554313	within coordinates
Rr554314	regulatory region 554314	151 bp proximal
Tssr17115	transcription start site region 17115	319 bp downstream
Tssr17116	transcription start site region 17116	29 bp upstream
Tssr17117	transcription start site region 17117	78 bp upstream
Tssr17118	transcription start site region 17118	94 bp upstream
Tssr17119	transcription start site region 17119	185 bp upstream
Tssr23369	transcription start site region 23369	1884 bp upstream
Tssr23370	transcription start site region 23370	1822 bp upstream
Tssr23371	transcription start site region 23371	634 bp upstream
Tssr23372	transcription start site region 23372	592 bp upstream
Tssr23373	transcription start site region 23373	573 bp upstream
Tssr23374	transcription start site region 23374	553 bp upstream
Tssr23375	transcription start site region 23375	497 bp upstream
Tssr23376	transcription start site region 23376	442 bp upstream
Tssr23377	transcription start site region 23377	390 bp upstream
Tssr23378	transcription start site region 23378	378 bp upstream
Tssr23379	transcription start site region 23379	294 bp upstream
Tssr23380	transcription start site region 23380	228 bp upstream
Tssr23381	transcription start site region 23381	1 bp downstream