rs254205643 SNP Detail

Summary

• ID
  rs254205643
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87417041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCACTCC TTGTTCTTAT
  GAGGATTTGA CCAGTGCCAG CCACCTCAGG GGAGACCACT GAGAGCTGCT GAGGGCCAGT
  AGAGGGAGAG GGAGACGGCT GGGAAACACA GGGAGAGAAT GATGTCTATT GAGGAAAAAA
  AGATCCAGAC TGGCTGAGAT GAGGGACCCT CGTTCCCCAC ACTGGGAGCT GGTCCCTCCT
  G
  GAGTAGGGGG AGGGGAGTGT CATTTACATG GAAGCCCCTC ACCCACCCAC CCCTCCCCCA
  CTCCAGAGTA GCTGGGCTGT GGAATGGCCC TGTGCATGTG ACAGGCTATT CTTTATCCTT
  TTCTGTATAG ATTTGGGTCT GGACCTTCAC AGCAGCTGTG ATAGGCTTTC TCCCATGCTC
  CTGAGATGCA TCAGTGGACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MOLF/EiJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss358778176	MGP_WTSI_3_87313656	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MOLF/EiJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs254205643					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358778176	MGP_WTSI_3_87313656	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87417041 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397760	regulatory region 397760	1197 bp downstream
Rr579501	regulatory region 579501	1219 bp distal
Rr579502	regulatory region 579502	1376 bp distal
Rr579503	regulatory region 579503	1310 bp distal
Rr579504	regulatory region 579504	296 bp distal
Rr579505	regulatory region 579505	580 bp distal
Rr579506	regulatory region 579506	550 bp distal
Rr579507	regulatory region 579507	within coordinates