rs254011140 SNP Detail

Summary

• ID
  rs254011140
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118941696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caggcagat ttctgttcaa ggttagcctg
  gtctacagag tgagttccgg gacagccagg gctacacaga gaaaccctgt ctcaaaagaa
  aaaaaACTAC TCAGCCCTGT GGGCACACAC CTGTATGGGG TTGGGAAAAA AAAAAAAAAA
  M
  AAGCTACATG GGAGTCTGAG GCAGGAAGAT TCAAAGTTTA AATGTCACCC TGGGAAATTT
  ATCCAGAGAA ACTTAACTAA GGTGTCTCTC AAAATACAAA GTAAATATAC ATCAAGAATG
  GTGGCTTTTT TTTGTGCAAC CCCAGACGTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320473759	CHEV_2_118936951	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254011140					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118941696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	1164 bp proximal
Gm57476	predicted gene, 57476	935 bp downstream
Rad51	RAD51 recombinase	1599 bp upstream
Rr563414	regulatory region 563414	314 bp proximal
Rr563415	regulatory region 563415	505 bp proximal
Rr563416	regulatory region 563416	1102 bp proximal
Rr563417	regulatory region 563417	1605 bp proximal
Tssr19603	transcription start site region 19603	1594 bp upstream
Tssr25799	transcription start site region 25799	1533 bp downstream