rs253646713 SNP Detail

Summary

• ID
  rs253646713
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87417272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TAAGACCAGC AGTCTTCTGC
  C
  CCATTCCCCA CTGCTTGGCA GTTAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320833958	CHEV_3_87313887	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253646713					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87417272 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397760	regulatory region 397760	1428 bp downstream
Rr579501	regulatory region 579501	1450 bp distal
Rr579502	regulatory region 579502	1607 bp distal
Rr579503	regulatory region 579503	1541 bp distal
Rr579504	regulatory region 579504	527 bp distal
Rr579505	regulatory region 579505	811 bp distal
Rr579506	regulatory region 579506	781 bp distal
Rr579507	regulatory region 579507	220 bp distal