rs253639880 SNP Detail

Summary

• ID
  rs253639880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180534593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTCTCC ACATAGGGCC
  GCCAGCAGGA GGCTAGGACC CCTTTCTTTC CCCCCCCCAG GAGAGAGAGG CTCAGAAGCC
  ACTGTGTAGA GTGGTTATTC CGGAAGGACC AGCCGCTTGT GTGAGGCAAG CACAGTGTGT
  TCGCTGCACA GCGGGGTGTG GCTGGTGGTG GGTGTAGAGG AGCTGCGGTC GGTGGGCTGC
  R
  GGAGAAGCTT TTGCGTGGGT CGTGCAGTAG GACAGAATGA GCGGTTCGAG AGTGTCCAAG
  AGGCAGTTTC TCTGCATACG TGTGACCCCG GGGCGCCGGG CACAATCGAA GGCGTTCGAG
  GGCTGCATCC GTGTGAGTCG AGGAGCGCGC GGAGCGGGAC GCCGAGCGTG TGCGCGGGAG
  GCACGGGTCG CGCGGTGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356769445	MGP_WTSI_2_180627505	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253639880					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356769445	MGP_WTSI_2_180627505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180534593 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	993 bp distal
Cpgi12908	CpG island 12908	within coordinates
Gm27032	predicted gene, 27032	Coding-NonSynonymous
Gm57443	predicted gene, 57443	within coordinates
Mir124a-3	microRNA 124a-3	1240 bp upstream
Rr572874	regulatory region 572874	1941 bp distal
Rr572875	regulatory region 572875	1471 bp distal
Rr572876	regulatory region 572876	970 bp distal
Rr572877	regulatory region 572877	33 bp distal
Rr572878	regulatory region 572878	within coordinates
Rr572879	regulatory region 572879	147 bp proximal
Rr572880	regulatory region 572880	246 bp proximal
Rr572881	regulatory region 572881	288 bp proximal
Rr572882	regulatory region 572882	613 bp proximal
Tssr22277	transcription start site region 22277	1947 bp downstream
Tssr22278	transcription start site region 22278	321 bp upstream
Tssr28138	transcription start site region 28138	131 bp downstream
Tssr28139	transcription start site region 28139	601 bp downstream
Tssr28140	transcription start site region 28140	608 bp downstream