rs253431466 SNP Detail

Summary

• ID
  rs253431466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138185679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACTGGA ATACAGAGAT
  GGTGGCTTTG GCCTGTAGGA TGAAACAGTT TGTGTGCGTT GTTGGGGGGT TATCAGCCAG
  TGGGCTGGAT GGGTCAGGCT ATCCCCTAAG AATGGCAGAG TCAGTGGACT TTGAATTTTG
  CAAATGGCTC CTTCTGGATT CCCTGAGGCT TGCTTGGGCC ATCCTGTTGG GTTGGGAGGC
  Y
  GCCAGTCCTG TGGAGACTGA AGCTGGGAGA CTGGACTTGG GTTCAGGTTC TAGCTCTGAC
  TGCCTTACTC TCGGAACTGG AACTTCTGTA AACATCACCT GCCTGATCTG CAGAGACCGA
  TGAACTCAGC TGCTGCCTCT TAGGGTCAAG AAGAGGAGTA TCAATCCTCG GCACACCAGA
  ACCTTCCACA TTGGGCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363441131	MGP_WTSI_4_138014283	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253431466					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363441131	MGP_WTSI_4_138014283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138185679 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Cpgi15153	CpG island 15153	1961 bp distal
Rr377275	regulatory region 377275	within coordinates
Rr602932	regulatory region 602932	1579 bp distal
Rr602933	regulatory region 602933	1424 bp distal
Rr602934	regulatory region 602934	1461 bp proximal
Rr602935	regulatory region 602935	1537 bp proximal
Tssr39862	transcription start site region 39862	1647 bp downstream
Tssr39863	transcription start site region 39863	1549 bp downstream
Tssr39864	transcription start site region 39864	1483 bp downstream
Tssr39865	transcription start site region 39865	1308 bp downstream
Tssr39866	transcription start site region 39866	988 bp downstream
Tssr39867	transcription start site region 39867	749 bp downstream
Tssr39868	transcription start site region 39868	679 bp downstream
Tssr39869	transcription start site region 39869	451 bp downstream
Tssr39870	transcription start site region 39870	422 bp downstream
Tssr39871	transcription start site region 39871	366 bp downstream
Tssr44166	transcription start site region 44166	1485 bp upstream
Tssr44167	transcription start site region 44167	1301 bp upstream
Tssr44168	transcription start site region 44168	1219 bp upstream
Tssr44169	transcription start site region 44169	1125 bp upstream
Tssr44170	transcription start site region 44170	1551 bp downstream