rs253419598 SNP Detail

Summary

• ID
  rs253419598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTAACA CAGTGGGGCT
  GGCAACTTCA CAAAACAAAC ACTAATGGAC AAAAAAGGAC TGAAACATAA GAGAATGATT
  TCAAAACCAC ACCCTTTTCA CCCTACATTT TGAAACACCC ACAAGAAATG GCACCATTTA
  TCAATCTCTA CCTGAGAAGT CCTGAGACCC TCCTCCCATG AGCAAACCCC TCATTCCTGC
  W
  GTGCTGGTTG AGTCATCCCT CCAACCCCAC CCCAGTTAGG AACTCTTTTA GTTTCACTTT
  CACTGTCTTA AGCATAAATA AAGAGCGAAC TCCTCACAAG TTCTCTGGCA AAAATCTGGA
  ACTTCCCGGG TTACTACAGG GTCTATGTCA CAGTGCCTGT GAGAGAGGAC AGAGCACTCT
  GCAGCCAGCC TCAGAGGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LG/J	LP/J	NON/ShiLtJ	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss360024920	MGP_WTSI_3_142283516	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LG/J	LP/J	NON/ShiLtJ	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs253419598					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024920	MGP_WTSI_3_142283516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326313 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	111 bp upstream
Gbp2b	guanylate binding protein 2b	1373 bp downstream
Gm54185	predicted gene, 54185	1270 bp upstream
Rr398088	regulatory region 398088	369 bp downstream
Rr586457	regulatory region 586457	1576 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	61 bp proximal
Tssr32225	transcription start site region 32225	1701 bp downstream
Tssr32226	transcription start site region 32226	1661 bp downstream
Tssr32227	transcription start site region 32227	44 bp upstream
Tssr32228	transcription start site region 32228	95 bp upstream
Tssr32229	transcription start site region 32229	134 bp upstream
Tssr32230	transcription start site region 32230	170 bp upstream
Tssr32231	transcription start site region 32231	187 bp upstream
Tssr32232	transcription start site region 32232	721 bp upstream
Tssr35947	transcription start site region 35947	1371 bp upstream