rs253304855 SNP Detail

Summary

• ID
  rs253304855
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144598139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACCAAGA CTATGTTTAG
  CTGAGCGTAG ACTTCACACT TGGAGAGGCT GTGAGAGCAG TCACGGGAAG CAGGCAGAGC
  AGCACCATAC TAACATTTCC AGTAGACACT GGAGGAAGCA TGCCCAGGTT CTTGGGCATA
  TATGGGTTGA GAGGGGGTGG TTTGGTTTTG TTTCATTTGT TTTGTTTTGT TTTTTTTTTT
  K
  TTTTGTTGGC ATGGTCTAGC TGACCTAGAA CTCTCCATGT AGAGCTGACT AGTCTCAAAT
  TTGCTGTCTC CAGAGTGCAG CGATTAAAGG AGTACATTGC TTTTTGTTTG TTTGTTTGTT
  TCAATTTTTC ATTTAATTAT TAGATATTTT CTTCATTTAC ATTTCAAATG CTATCCCAAA
  AGTCCCCTAT TCCCTTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss363589641	MGP_WTSI_4_144461472	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G	G	G	T	G	T	T	G	T	T	G	T	G	T	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs253304855					SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G	G	G	T	G	T	T	G	T	T	G	T	G	T	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363589641	MGP_WTSI_4_144461472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144598139 () rs orientation: forward

Symbol	Name	Function Class
Gm57096	predicted gene, 57096	within coordinates
Rr604241	regulatory region 604241	1248 bp proximal
Rr604242	regulatory region 604242	1564 bp proximal