rs253295044 SNP Detail

Summary

• ID
  rs253295044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107546196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttttttga gacagagtct ctcgatgaac
  caggagctaa gtgattcagc cagactaaat ggccaggaag caacaggaat gaatatatat
  atatatatat atatatatat atatatatat atatatatgt atatatatat atatatatgt
  R
  tatTCCtgtt gaagaatatt tgatcacatt gtgaaccctg agattgttat ttactgaaaa
  aaaaatgttt ctagttatga agtaggtagc ccttagcaca cacctttaat ctctctggct
  ggaatacaga cacaccttta gcacacatct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250050	CHEV_4_107361604	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253295044					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107546196 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	601 bp upstream
Gm12899	predicted gene 12899	321 bp downstream
Rr376978	regulatory region 376978	188 bp downstream
Rr597042	regulatory region 597042	310 bp distal
Tssr38260	transcription start site region 38260	506 bp downstream