rs253207563 SNP Detail

Summary

• ID
  rs253207563
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87417727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAG CTCTAATTTG GGGCTAAGCA
  G
  TGCAGTCTGC CCTGTTTCTG TCTGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320833964	CHEV_3_87314342	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253207563					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87417727 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397760	regulatory region 397760	1883 bp downstream
Rr397761	regulatory region 397761	1987 bp upstream
Rr579501	regulatory region 579501	1905 bp distal
Rr579503	regulatory region 579503	1996 bp distal
Rr579504	regulatory region 579504	982 bp distal
Rr579505	regulatory region 579505	1266 bp distal
Rr579506	regulatory region 579506	1236 bp distal
Rr579507	regulatory region 579507	675 bp distal
Rr579508	regulatory region 579508	1588 bp proximal