rs253199634 SNP Detail

Summary

• ID
  rs253199634
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107546069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGATTCA AACACTATGC
  AGTGCCCAGG ACTACTTTTT AATTTTTAAA AAATGTGTGT GTGTGTATGT CTTTGTGTAT
  GAACACGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTAAGCTAAT
  AGATACTGGA TATCTTCCTC AATTACTAAC CATCTTATTT TTTTTGAGAC AGAGTCTCTC
  A
  ATGAACCAGG AGCTAAGTGA TTCAGCCAGA CTAAATGGCC AGGAAGCAAC AGGAATGAAT
  ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATGTATAT ATATATATAT
  ATATGTGTAT TCCTGTTGAA GAATATTTGA TCACATTGTG AACCCTGAGA TTGTTATTTA
  CTGAAAAAAA AATGTTTCTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250047	CHEV_4_107361477	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253199634					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107546069 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	728 bp upstream
Gm12899	predicted gene 12899	194 bp downstream
Rr376978	regulatory region 376978	61 bp downstream
Rr597042	regulatory region 597042	183 bp distal
Tssr38260	transcription start site region 38260	379 bp downstream