rs253060552 SNP Detail

Summary

• ID
  rs253060552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155687465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGATTCA TTTCCAGTGC
  AGAAGATGGA GAGACAGAAC AACATGAAGG ACCTGTCCAC AAGATGGAGA TCCTGTGGCT
  GGTAATGTGG ATGTCCCCAA CTGTTTATGT CTTAATCTGA GCACACCACA CCAGTGATCC
  TGAAAAGATC CATTCTTCAG AAGTGATAAA CACTATCATA AAGCCACAGG GTGCAATGTG
  Y
  TACTTTAGTC AGGAGTGAGT GACTGTCCCT TCCGTACAAA TTCTTCACTA CTGAGTGAAG
  TGTCACTGTT AGAAGCAGGA TGGGGGGCAG ATTGTGAGCC CATGCAGGCC CTTTTCTGAG
  TTATTATTTC CCTTAGATAA ACTTTTAGAC ATGCATGGTA CTTGGAGACT TGATGTATTG
  TTTTCATTAA ATAACCACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363798271	MGP_WTSI_4_154977117	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253060552					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363798271	MGP_WTSI_4_154977117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155687465 () rs orientation: forward

Symbol	Name	Function Class
B930046K06Rik	RIKEN cDNA B930046K06 gene	1152 bp upstream
Cpgi15473	CpG island 15473	671 bp distal
Rr398921	regulatory region 398921	1543 bp downstream
Rr606514	regulatory region 606514	1387 bp distal
Rr606515	regulatory region 606515	1163 bp distal
Rr606516	regulatory region 606516	1319 bp distal
Rr606517	regulatory region 606517	1054 bp distal
Rr606518	regulatory region 606518	564 bp distal
Rr606519	regulatory region 606519	within coordinates
Rr606520	regulatory region 606520	826 bp proximal
Slc35e2	solute carrier family 35, member E2	Intron
Tssr40681	transcription start site region 40681	1731 bp downstream
Tssr40682	transcription start site region 40682	1595 bp downstream
Tssr40683	transcription start site region 40683	1565 bp downstream
Tssr40684	transcription start site region 40684	1068 bp downstream
Tssr44954	transcription start site region 44954	1716 bp upstream
Tssr44955	transcription start site region 44955	1167 bp upstream