rs252788724 SNP Detail

Summary

• ID
  rs252788724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167431283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCCTGAG AAGGTGGTGA
  CCACAGGCAC AGCATTCCCA CGCACCTGCC ATTTGGTCCG AGCGGAGCAG CTGGGGCCCT
  GGCGGCTGGG GGAAAGGTGC ATGGCCCTGG GGGATCCTAG CAGCTTCGGA GATGTTTCCT
  GATGCCTGCC TGGAAGGACT TGCTCCCTCC CGGCAGAGGA GAAACCCAAG GCCAAGGGGC
  R
  TTCCCACTGG TCACCGGCTC CCAGGGGTGG CGACTGTCTT CCTGCCTCTG CCCCAGCTTT
  GCCCCTGCTG GGAAAGTTCT TCCTCTAGTG GCCTATAGAT CTGCCCCCTT CCCAGTGCAG
  CACACACGTC ACTTCCTCAG GGACCTTCCT GACCAGGCAC TTGCTCAGAG CCCTGCGGGT
  TTCCGCTTTC ACAAGGAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356508126	MGP_WTSI_2_167414863	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252788724					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356508126	MGP_WTSI_2_167414863	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167431283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12749	CpG island 12749	179 bp distal
Gm11476	predicted gene 11476	within coordinates
Gm31619	predicted gene, 31619	within coordinates
Rr397510	regulatory region 397510	within coordinates
Rr570646	regulatory region 570646	1740 bp distal
Rr570647	regulatory region 570647	973 bp distal
Rr570648	regulatory region 570648	within coordinates
Rr570649	regulatory region 570649	43 bp proximal
Rr570650	regulatory region 570650	75 bp proximal
Rr570651	regulatory region 570651	1064 bp proximal
Rr570652	regulatory region 570652	1966 bp proximal
Tssr769	transcription start site region 769	362 bp downstream
Tssr21821	transcription start site region 21821	261 bp downstream
Tssr21822	transcription start site region 21822	185 bp upstream
Tssr21823	transcription start site region 21823	229 bp upstream
Tssr21824	transcription start site region 21824	1375 bp upstream
Tssr27780	transcription start site region 27780	40 bp downstream
Tssr27781	transcription start site region 27781	1154 bp downstream