rs252694903 SNP Detail

Summary

• ID
  rs252694903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117741083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAA AAGCAGGTTG GGTAAGATTT
  R
  GGGTGGTGTT GGAATCAAGA ATTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280670	CHEV_4_117556491	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252694903					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117741083 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0b	ATPase, H+ transporting, lysosomal V0 subunit B	440 bp downstream
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	359 bp upstream
Cpgi14670	CpG island 14670	42 bp distal
Gm12841	predicted gene 12841	within coordinates
Rr598245	regulatory region 598245	785 bp distal
Rr598246	regulatory region 598246	862 bp distal
Rr598247	regulatory region 598247	302 bp distal
Rr598248	regulatory region 598248	647 bp distal
Rr598249	regulatory region 598249	within coordinates
Tssr38640	transcription start site region 38640	307 bp downstream
Tssr38641	transcription start site region 38641	276 bp downstream
Tssr43002	transcription start site region 43002	379 bp upstream
Tssr43003	transcription start site region 43003	611 bp downstream