rs252655134 SNP Detail

Summary

• ID
  rs252655134
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131987838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACCCAA CAAAGCTCAA
  ATACACCTAC TCAATGAACT TAAGTATAAA AGAAAAACAA GTTATTATAT GGTTGAAAAA
  TTAGAAGCGT TAGGCCCAAG CTCTTATGAA AACGTTCCAT AATACTAGCC AAGGAAAGGG
  GGCTGGGCAG ATGGCAAGAG TGTACAGATG TGGAGAAAAC CCCTACTTCC TGGTTCTCCT
  W
  GAGTCAGTAA CAGGTCGCAT TTTGAGAGCT CAGGGTTTCC TTGCTCCTTG GACAGCCAGG
  TCAAGACCCT CGGGTAAGAT TCTGCCCACA TTTCTCTTGC CTCTCAAACC GAGGACACCT
  GGCCAATTCC CTGTCATTTC TGAAAGCAAG GGGTACCCTC TTCCCAGCAA GTACCTTCTC
  ACTAACCCCA TAACCTTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331985	CHEV_4_131816442	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252655134					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131987838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14953	CpG island 14953			209 bp proximal
Gm28874	predicted gene 28874			9 bp upstream
Gmeb1	glucocorticoid modulatory element binding protein 1			Intron
				mRNA-UTR
Rr600911	regulatory region 600911			within coordinates
Rr600912	regulatory region 600912			12 bp proximal
Rr600913	regulatory region 600913			984 bp proximal
Tssr39362	transcription start site region 39362			10 bp downstream
Tssr39363	transcription start site region 39363			within coordinates
Tssr43650	transcription start site region 43650			999 bp downstream
Tssr43651	transcription start site region 43651			1069 bp downstream