rs252538801 SNP Detail

Summary

• ID
  rs252538801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107686339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAGGCCA GGGGCGGGCT
  GGCACGCCCC CTGCCCCCAC CCCGGATCTT CATTCTGCTG GCAGCAGTTG TCTTGGCAAC
  CTCAGGGCCT GGCGAGCTCT GCAGAAGGGT AACAGTGTAG GGAGCAGCCC TTTCATCTCC
  CCGAACAGGG TACAAGTGCC CAGCTGCCTT AGGGCTGGCT GCGGGCTGAG CCAGGCCTCC
  Y
  GGTGCTGGCC TGGGCCTGAG AGAGGAAGTG GAAGCAGCTG AGTGGATCCC TCTGGGCAGG
  GACCCACCCC AGGTCACTCG GTCGGTCGGT CGGTCGCAGT GCTGAGCTGG ACTCCACCTT
  TCTTACTGGT CTCTTGCTCT GCTTCTGTCT GGAGCTCAGT TTGCATCCCT GACATCTCTC
  TGGCCCAGGT GACTGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251699	CHEV_4_107501747	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252538801					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107686339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			within coordinates
Rr597082	regulatory region 597082			1698 bp proximal
Tssr38270	transcription start site region 38270			1807 bp upstream
Tssr38271	transcription start site region 38271			1816 bp upstream