rs252520335 SNP Detail

Summary

• ID
  rs252520335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119337587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTTCCTG TAGTCACAGA TGGTTTGTCA
  CTTCCCCTTT TCTGTTTGTT TTTTTGTTTT Gttttgtttt ttgagacaga gtttctctgt
  atagccctgg ctgtcctgga actcactttg tagaccaggc tgacctcaaa ctcagaaatc
  Y
  gcctgcctct gcctcccgag tgctgggatt aaaggcgtgt gccaccatgc ccagccccat
  tttcttgatc atagcaatcc tggagcgagt aaaatggtct ctcactgtac ttctttgtat
  ctgtcttgta gttccctaaa tgactgataa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321927750	CHEV_6_119310644	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252520335					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119337587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adipor2	adiponectin receptor 2			Intron
				Noncoding-Transcript-Variant
Rr637644	regulatory region 637644			17 bp proximal
Tssr62709	transcription start site region 62709			1109 bp upstream