rs252057899 SNP Detail

Summary

• ID
  rs252057899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34702585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCAAGC CTGGGAGAAT
  GGGGATTGGA GATGTGGGGG TGGGGAAGAG GCGTTGGTGG GCAGAGAGGG AAGGATAAAC
  AGGGCAGTTT GTAAGGACAA TGAGCGGAGC GTGGCCGGCA GATACCCTTG TGAACGTTTT
  CTTTAGGCAG AGTTGGGGTA GATGAGGGGA GGAGGGGCCG CGAGAGTATT GCAGGGAAAA
  R
  AAAGAAAGAA AGAAAGAAAA TAAGTAACCC TGATGGTTTA AGCTCTTTAT TTAAAAAAAA
  AAAAAAAATG GCATCAGGAC TTTCTTCCTT CTCTCCCCTC TTTTGTACCC AAGTGCATTT
  TAGCCACAAA GGTTCCAACA AGAGAGTGGA AGGAAACTTA GACGGGGCTT TGTTTGACTC
  CGTGTAGCGA CAACAAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357517478	MGP_WTSI_3_34547358	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252057899					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357517478	MGP_WTSI_3_34547358	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34702585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13072	CpG island 13072	283 bp proximal
Gm64654	predicted gene, 64654	1563 bp downstream
Gm64662	predicted gene, 64662	within coordinates
Gm64674	predicted gene, 64674	1557 bp upstream
Rr550	regulatory region 550	1868 bp distal
Rr370604	regulatory region 370604	within coordinates
Rr575165	regulatory region 575165	1459 bp distal
Rr575166	regulatory region 575166	within coordinates
Rr575167	regulatory region 575167	532 bp distal
Rr575168	regulatory region 575168	1419 bp proximal
Sox2	SRY (sex determining region Y)-box 2	1969 bp upstream
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28821	transcription start site region 28821	1487 bp upstream
Tssr28822	transcription start site region 28822	1551 bp upstream
Tssr28823	transcription start site region 28823	1588 bp upstream
Tssr28824	transcription start site region 28824	1738 bp upstream
Tssr28825	transcription start site region 28825	1786 bp upstream
Tssr32975	transcription start site region 32975	49 bp downstream
Tssr32976	transcription start site region 32976	516 bp downstream
Tssr32977	transcription start site region 32977	1288 bp downstream
Tssr32978	transcription start site region 32978	1320 bp downstream
Tssr32979	transcription start site region 32979	1411 bp downstream