rs252019281 SNP Detail

Summary

• ID
  rs252019281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107544000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTGTTT GTGCTGGGCA
  TGGAACCCGG GCCTTGAGCA TGTTAGGCAA GTTATCCAAC TAAAAATCCC ACCTTTTATT
  TTCCCTTCTT TCCTTCCCTG CCTCCCTGCC TCCCTCCCTC CTTTTTTCTT TGTGTAGAAT
  CTAAGTGAAG TTACTCAGGC TGCCCTGGAG CCCCCTCAGA AGCCCTGCTG TGGACCCCGA
  R
  CCCCAGATCA CCTGACTTAA GCTTCCCATG AGGTTCAGTT ACAGCCAGAT CCAGCTACAA
  ACATTAATGA CAGATATTAA GTTATTCATA AATTTATTTT TATAAAAGTT TGTGGCACTC
  TTGAGGGGTG TCATCTGAAG TGGGTAGGGA CACAATAATA CCTAAGCTTA GGGCACGATC
  TGCTCTATTT TTGTTTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250036	CHEV_4_107359408	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252019281					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107544000 () rs orientation: forward

Symbol	Name	Function Class
Gm12899	predicted gene 12899	1325 bp upstream
Rr376978	regulatory region 376978	630 bp upstream
Rr597042	regulatory region 597042	1198 bp proximal
Tssr38260	transcription start site region 38260	1686 bp upstream