rs251560940 SNP Detail

Summary

• ID
  rs251560940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120809356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTATAAAT TGTTGTGAGT CATTATGTGG TTATAGGGAA
  TTGAACTCAG GACCTCAGGA AGAGCAGCCA TCTCTCTAGG CCATTGTAGT GGGCTCTTTA
  R
  GTCATTCCCC TCCCCCCACA ACTCACTCCT AATATCGCTA TAGACTACAC AAACACTTGT
  TAACCTATAA TAACAATACC CTTGCTGAGA TAATCTTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320480961	CHEV_2_120804611	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251560940					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120809356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			994 bp distal
Gm55820	predicted gene, 55820			1148 bp upstream
Rr397244	regulatory region 397244			within coordinates
Rr563752	regulatory region 563752			1848 bp distal
Rr563753	regulatory region 563753			1817 bp distal
Rr563754	regulatory region 563754			1332 bp distal
Rr563755	regulatory region 563755			1745 bp distal
Rr563756	regulatory region 563756			1363 bp distal
Rr563757	regulatory region 563757			104 bp distal
Tmem62	transmembrane protein 62			Intron
				Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722			1768 bp downstream
Tssr19723	transcription start site region 19723			1690 bp downstream
Tssr19724	transcription start site region 19724			1567 bp downstream