rs251547890 SNP Detail

Summary

• ID
  rs251547890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65287363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTAACTT CAAATTATCC
  TTTCCAAATT AAAACAATAT ATCAAACAGT ACAAGTTGTA TATTTAATCC AAGACTTCTA
  TTAAGTTATA AATGAGTAAA TCGTGAAATA AAAATTCTTA ACACTAAGAG TCTACCTATC
  ACACATATGA GAAAGGAAAG AATGTGAGCA CTCTGAATGT CCTATTTTAC TGGTGTGATG
  W
  ATGGGGTCTT TTTATGGTAC AAACTCTGCC TGCCACAGAT TTCACTGTCT TACTGAACAC
  TTCGTAATCC TATGTGCAAT GTTCAATGGT GGAGAAGAGG CTAGAGAGGA GGGGCCACAC
  TTCTAAGTAC AAAGGGCTGA TACACTGGCT GCATGACTTC ACACACAGAA ATGTGGTAGC
  ACAGAGTTAG AGAACATGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358233054	MGP_WTSI_3_65183864	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251547890					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358233054	MGP_WTSI_3_65183864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65287363 () rs orientation: forward

Symbol	Name	Function Class
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	1720 bp downstream
Rr577674	regulatory region 577674	159 bp proximal
Rr577675	regulatory region 577675	388 bp proximal
Ssr3	signal sequence receptor, gamma	mRNA-UTR
Tssr33458	transcription start site region 33458	365 bp downstream
Tssr33459	transcription start site region 33459	840 bp downstream
Tssr33460	transcription start site region 33460	989 bp downstream
Tssr33461	transcription start site region 33461	1098 bp downstream
Tssr33462	transcription start site region 33462	1334 bp downstream
Tssr33463	transcription start site region 33463	1454 bp downstream