rs251346393 SNP Detail

Summary

• ID
  rs251346393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGCAC ATATTCAGGA
  GAAGGTTCTC TGTGAGAGAG GACGGGTGCC ACACTTCTCA AGCAGCAGGC AGGGGAGTTC
  TTGAAGAAAG GGACAATATT TTACTTGTCA GTAAAAGAAA CACAAATCAA CAGAAGCAAA
  AGCAATACTT TATTGATTTA GTAAATAAGA CAATCTGAGT CTAGTCATGG AGCTTGAGTC
  W
  CTACCACATC AAGATTCTTG AAAAATGTCC TAGGAGACAC CGTTCTTCTT TTTTTTTTTT
  TAATAGCTTG TCAACTTTTA TTTACAGAGT CCCATATGTG TGAAGATAAT GCTAATACAA
  GACAATTTTA CACTCATATG ATTCATAGAT GCCATGATTT TAAAAAGAAA CTCTTTCCCA
  ACTCTGTTTT TTGTTTTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368091139	MGP_WTSI_6_42535289	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251346393					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368091139	MGP_WTSI_6_42535289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm38798	predicted gene, 38798			1737 bp upstream
Rr629347	regulatory region 629347			1483 bp distal
Rr629348	regulatory region 629348			1582 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			64 bp downstream
Tssr56047	transcription start site region 56047			60 bp upstream
Tssr56048	transcription start site region 56048			670 bp upstream
Tssr56049	transcription start site region 56049			720 bp upstream
Tssr60620	transcription start site region 60620			450 bp downstream
Tssr60621	transcription start site region 60621			468 bp downstream
Tssr60622	transcription start site region 60622			514 bp downstream
Tssr60623	transcription start site region 60623			570 bp downstream
Tssr60624	transcription start site region 60624			612 bp downstream
Tssr60625	transcription start site region 60625			680 bp downstream
Tssr60626	transcription start site region 60626			695 bp downstream
Tssr60627	transcription start site region 60627			711 bp downstream
Tssr60628	transcription start site region 60628			855 bp downstream
Tssr60629	transcription start site region 60629			910 bp downstream
Tssr60630	transcription start site region 60630			979 bp downstream
Tssr60631	transcription start site region 60631			1023 bp downstream
Tssr60632	transcription start site region 60632			1075 bp downstream
Tssr60633	transcription start site region 60633			1101 bp downstream
Tssr60634	transcription start site region 60634			1114 bp downstream
Tssr60635	transcription start site region 60635			1180 bp downstream
Tssr60636	transcription start site region 60636			1285 bp downstream
Tssr60637	transcription start site region 60637			1541 bp downstream
Tssr60638	transcription start site region 60638			1581 bp downstream
Tssr60639	transcription start site region 60639			1632 bp downstream
Tssr60640	transcription start site region 60640			1887 bp downstream