rs251243333 SNP Detail

Summary

• ID
  rs251243333
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67658025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTCAGG ACTCAGTGAG
  TTGCAGCAAT GTTGTACACT GGAGAAAGAG CTCAGCTAGG ATCCATGCCT GTCACAAAAG
  CCACCCTAAG AGTATGTCCA CTCTTGCTTG CAGGGGAGTT GAGAGAAAGC AAGGAGAGGA
  CGAGAAAGAA GATTTATCAA TCCCCAAAGT TGATAAGTTG TGCCTCAAGA GACAGGCAAA
  M
  TCAAGACTTT CCAAAAATCT AGCTTCCAGG AAATTAATAA ATATCCTCAA TTAATTTCAG
  GACGACAGTA GTGAATATCT CTTAGCTGGT TATCCTGAAT CAAGAAAGAA ATGTGGGTTC
  CAACTCAAGA CAACCTAACC CCTCTTATCA GCTTTGAAGT TTTTTCCTGG AGTTGCTGGC
  AAGGAGACTG GAAAAGTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368653903	MGP_WTSI_6_67631035	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	C	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251243333					SNP	C	C	C	C	C	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368653903	MGP_WTSI_6_67631035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67658025 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Rr379537	regulatory region 379537	878 bp upstream
Rr631677	regulatory region 631677	422 bp proximal