rs251100009 SNP Detail

Summary

• ID
  rs251100009
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89302275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCCCCA AGCAGGGGGA
  GGGGTGGAGT CGGCCCTTCC CTCCCTCTTT CTCCCCCCCC CCCCCCCCCC ATGACTCAGC
  CTCGAGGCCG CTGCTCTGCC CCTCAGCCAG GGGCGGAAAG TGTGAGGCGC CCCGGAGGGC
  TCAAGCCAAA CTAAACAGCC CCTCACCCCA GACATTATCT CACTGGAGAA TTAGGGGGGC
  W
  ATAGGGACCA GTGGCTAGCA TGAGGAACTC TGGCTCAAGC AATCCGTTCC GGGTTTTCCT
  ATCTGTTTCT GTCCCGCTTT CCCCCGCCCC CAACACCAGC ACGCCCTAGG TCAAGTCTGA
  TCTTTGCTCC AGGTTTTCCT AGCGGCCCCG CAGGACTGTC GGAAGGATTC CGAGCAAGAT
  GTGTCTGGAC TAGGGTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811630	MGP_WTSI_3_89198890	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251100009					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811630	MGP_WTSI_3_89198890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89302275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13428	CpG island 13428	1715 bp distal
Cpgi13429	CpG island 13429	252 bp distal
Cpgi13430	CpG island 13430	1071 bp proximal
Gm15417	predicted gene 15417	within coordinates
Rr381	regulatory region 381	1179 bp proximal
Rr397788	regulatory region 397788	1102 bp downstream
Rr580072	regulatory region 580072	1617 bp distal
Rr580073	regulatory region 580073	691 bp distal
Rr580074	regulatory region 580074	246 bp distal
Rr580075	regulatory region 580075	253 bp proximal
Rr580076	regulatory region 580076	754 bp proximal
Rr580077	regulatory region 580077	981 bp proximal
Rr580078	regulatory region 580078	1599 bp proximal
Tssr30100	transcription start site region 30100	1104 bp downstream
Tssr30101	transcription start site region 30101	647 bp downstream
Tssr30102	transcription start site region 30102	741 bp upstream
Tssr34133	transcription start site region 34133	1776 bp upstream
Tssr34134	transcription start site region 34134	1632 bp upstream
Tssr34135	transcription start site region 34135	1284 bp upstream
Zbtb7b	zinc finger and BTB domain containing 7B	1299 bp upstream