rs250756558 SNP Detail

Summary

• ID
  rs250756558
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:115931342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAACTTG AAAAAATTAA
  GGGATAAATA ATTTGCCAAC TAATTAATCC ATTAAGCCCT GATGGCTTGT CCTGAAGTAG
  ACAAGACAAA TGCACAGGAA ATGGAAGCAA AGTGAGTCTC GGGCTAGAGC TCTGGCTCTC
  AAGCCTGGAC GTCTGCATTG GAGTCCCAGT TGTATTGTCT TGCTAGTTGT GTGCCCTCAT
  W
  CAAGATAAAC TTCCTTGCTT GCTGCCTCAT GTAATAAAAG TGACAAAAAT ATATAATGTA
  CCTGATATTT ACCTCATGGG GAAACTGTGC AAGTTAAGTA TCTTAGTGCA TATAAAGCAC
  TCAGCACATA AGCAGCCAAT ATTTATCACA ATGATGCTCA ACTTGGGAAA GAGCTCCCTC
  TTGCACCACA GAATTACACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362943156	MGP_WTSI_4_115746750	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	A	A	T	A	T	T	A	A	T	A	T	T	T	T	A	T	T	T	A	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250756558					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	A	A	T	A	T	T	A	A	T	A	T	T	T	T	A	T	T	T	A	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362943156	MGP_WTSI_4_115746750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115931342 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrrc41	leucine rich repeat containing 41			1124 bp upstream
Rr398400	regulatory region 398400			841 bp upstream
Rr597852	regulatory region 597852			659 bp distal
Rr597853	regulatory region 597853			737 bp distal
Rr597854	regulatory region 597854			within coordinates
Rr597855	regulatory region 597855			876 bp proximal
Rr597856	regulatory region 597856			1340 bp proximal
Tssr38493	transcription start site region 38493			1199 bp upstream
Tssr38494	transcription start site region 38494			1231 bp upstream
Tssr38495	transcription start site region 38495			1247 bp upstream
Tssr38496	transcription start site region 38496			1292 bp upstream
Tssr38497	transcription start site region 38497			1317 bp upstream
Tssr38498	transcription start site region 38498			1378 bp upstream
Tssr38499	transcription start site region 38499			1392 bp upstream
Tssr38500	transcription start site region 38500			1421 bp upstream
Tssr42858	transcription start site region 42858			855 bp downstream
Tssr42859	transcription start site region 42859			877 bp downstream
Uqcrh	ubiquinol-cytochrome c reductase hinge protein			Intron
				Noncoding-Transcript-Variant