rs250682841 SNP Detail

Summary

• ID
  rs250682841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154110402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGCCTT GGGTGGTTAG
  GCCTCCCTAA CCCTTCCCAG TCCGGAATTC TCCGGCCAGG GAAGCTCTGG CCCCGGAGGA
  CAGGGAATGG TGGGGCGTGC TGCCAGGCCC ACCTCCTTGG GCTGTGCGGG AGGGAAGCCG
  CGGTCTCTAC CGAGTGCGAC TCACCTGTGC CTCTTGCAAG GGCCGCCCGC ACGCCAGGGA
  R
  GCTTCTCCAG CCCCCTGGGG TGACGGGGGC GGGGCCGAGG CCGGGGAGAG GGCAGGGTCT
  GAAGGGCGGG GCCAAGGGAG AGAGGCCAGC CTGGGAAGCC TGCAGTCACA GTCGCCAAGG
  AAGTCTAGTC TAGATGAGGA GGGGCGGACC CCCCTCGGAC TTTTCCCAGC CTGCTGCAGA
  ACCGTACAAG CCATCCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363758497	MGP_WTSI_4_153400054	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250682841					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363758497	MGP_WTSI_4_153400054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154110402 () rs orientation: forward

Symbol	Name	Function Class
Ccdc27	coiled-coil domain containing 27	694 bp downstream
Cpgi15428	CpG island 15428	within coordinates
Gm57064	predicted gene, 57064	within coordinates
Rr606055	regulatory region 606055	1100 bp distal
Rr606056	regulatory region 606056	within coordinates
Rr606057	regulatory region 606057	199 bp proximal
Rr606058	regulatory region 606058	275 bp proximal
Smim1	small integral membrane protein 1	mRNA-UTR
Tssr40573	transcription start site region 40573	77 bp upstream
Tssr40574	transcription start site region 40574	249 bp upstream
Tssr44854	transcription start site region 44854	311 bp upstream
Tssr44855	transcription start site region 44855	259 bp upstream
Tssr44856	transcription start site region 44856	26 bp upstream
Tssr44857	transcription start site region 44857	within coordinates
Tssr44858	transcription start site region 44858	115 bp downstream