rs250482543 SNP Detail

Summary

• ID
  rs250482543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131988413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCTCT CCAGGTCTGG
  TGGCCCAGGC CTCTCCCCTC GGGCGAAGGC TTGACCCTAT TCCCTGCACC CCACCCCCAC
  CCCAGCACGC CGCCCTCTCC CCCGACCCGG CCCGACCCAG GCCTGACCCA GCTCCTCCGC
  GCAAGGCCCA AGCTCCCAAA CCCCGTATTT TTGGGGTGGG GAGGGATTCC CCTGGCCCCT
  Y
  CGCGAGGACT TCCGGGCCCC TCGGTCCGGG GGCGCCGAGC CTTCCCCACC CCCCCAACCC
  CCGCCCAGTA CGGGGTTCGT AGGACCCGGA GCCTAGGCCC GGCCGGCCAC GCTGGGGGCG
  GCCCGGCGGC TCGGGCGGAC CCAGCGGCAG CGTCCCCCCA CCCCCCCCGC GGCGCCGCGA
  CGTCCGCTCG CTCCCCGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331988	CHEV_4_131817017	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250482543					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131988413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14953	CpG island 14953			within coordinates
Gm28874	predicted gene 28874			within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1			Intron
				mRNA-UTR
Rr600911	regulatory region 600911			564 bp distal
Rr600912	regulatory region 600912			within coordinates
Rr600913	regulatory region 600913			409 bp proximal
Rr600914	regulatory region 600914			1766 bp proximal
Rr600915	regulatory region 600915			1961 bp proximal
Tssr39362	transcription start site region 39362			585 bp downstream
Tssr39363	transcription start site region 39363			564 bp downstream
Tssr43650	transcription start site region 43650			424 bp downstream
Tssr43651	transcription start site region 43651			494 bp downstream