rs250387804 SNP Detail

Summary

• ID
  rs250387804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5284412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGTTTTT TTTTTGGCTC
  AAAGATTTGC TCTGCTGAGG GAGGGAGAAG GCACAGGCGG AGGGGGGATT GGGGCTGGAG
  GTGGGGGGGA GGCATGCTTT TCAAGATTTA ACTTTTGTAT TAAGTGACTT TCGGCCGAGC
  AGTTTTCTGT CTTTTTCTCA GTCTTTTCGG GTTCTGCTTT CCTCGGGAGC CGGAGACACT
  Y
  TGGTGATCCG GCGAAGCTGT CATTTCGGCA GCGGCTCGGA CATTATCTGG GGTCCTCGCT
  CGCTCCGCGT CCCTGCACCC CATCGAGATG ATGTTTCCTC TGCACACATT CTCCGAAAGT
  TTGGACAGTG GTCGGTGGGG CTCGCAGCCC CCCTCTCCTC TCCTCTCCCT TGATCCTCCC
  CTGTACTCTT CTCGGTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356829135	MGP_WTSI_3_5219352	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250387804					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356829135	MGP_WTSI_3_5219352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5284412 () rs orientation: forward

Symbol	Name	Function Class
2700069I18Rik	RIKEN cDNA 2700069I18 gene	within coordinates
Rr573172	regulatory region 573172	788 bp distal
Rr573173	regulatory region 573173	within coordinates
Rr573174	regulatory region 573174	1566 bp proximal
Tssr28265	transcription start site region 28265	808 bp downstream
Tssr28266	transcription start site region 28266	791 bp downstream
Tssr28267	transcription start site region 28267	765 bp downstream
Tssr28268	transcription start site region 28268	738 bp downstream
Tssr28269	transcription start site region 28269	668 bp downstream
Tssr28270	transcription start site region 28270	522 bp downstream
Tssr28271	transcription start site region 28271	316 bp downstream
Tssr28272	transcription start site region 28272	299 bp downstream
Tssr28273	transcription start site region 28273	278 bp downstream
Tssr28274	transcription start site region 28274	1696 bp upstream
Tssr28275	transcription start site region 28275	1837 bp upstream
Tssr28276	transcription start site region 28276	1873 bp upstream
Tssr32523	transcription start site region 32523	1419 bp downstream
Zfhx4	zinc finger homeodomain 4	Intron