rs250207806 SNP Detail

Summary

• ID
  rs250207806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151947580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGAGAG GGAGGGGAAG
  GGCAGAGTGC AGGAATTCCG CACATAGAAA AATAAAAGGG AAGGAGAAGA GGGAGGGCAA
  ACACCATGCA GGGATTCTGC AGGTGCACTG AAGGGAAGCG GGAGGGAAGG AAGGAGAATG
  CACTTTAATG AAAAGCAGCT GAGCTCCAGA TCCTCTCTGT AAACTTGCAC TGTTTGATTC
  Y
  TCAACATTTT TTTCTCTCTC TCTCCGTTTG CTACTAGCAG AAACACTGAA AAGTCGATCG
  AGTGTTTTGG CGTTAGGATT GATCGTCAAA GCCAGTCTGT GCCAATCCTA ACAACGTGTG
  GTCTTCTTAT GATGGTCACC GTTGAGAATT GCTTAGGTTG TTCCAAAAAT AAAGATGTCC
  CAAAAGAATG TTTTGTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363699476	MGP_WTSI_4_151237232	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250207806					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363699476	MGP_WTSI_4_151237232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151947580 () rs orientation: forward

Symbol	Name	Function Class
9230110K08Rik	RIKEN cDNA 9230110K08 gene	within coordinates
Camta1	calmodulin binding transcription activator 1	1355 bp upstream
Cpgi15375	CpG island 15375	178 bp distal
Gm42357	predicted gene, 42357	within coordinates
Gm57065	predicted gene, 57065	within coordinates
Rr398891	regulatory region 398891	1091 bp downstream
Rr605651	regulatory region 605651	1388 bp distal
Rr605652	regulatory region 605652	1951 bp distal
Rr605653	regulatory region 605653	883 bp distal
Rr605654	regulatory region 605654	1317 bp distal
Rr605655	regulatory region 605655	within coordinates
Tssr40478	transcription start site region 40478	904 bp downstream
Tssr40479	transcription start site region 40479	868 bp downstream
Tssr40480	transcription start site region 40480	452 bp downstream
Tssr44794	transcription start site region 44794	1444 bp upstream
Tssr44795	transcription start site region 44795	1362 bp upstream
Tssr44796	transcription start site region 44796	1350 bp upstream