rs250124818 SNP Detail

Summary

• ID
  rs250124818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGATGCT TTTGGTTTAT
  AAATTCCTCA GAGCCACCTT ACTCTTTCAT TCTCATCTTT GAAAGTTAAA CAGGAACGTC
  GGCACGTGCT GGTGGTACAC GCTTTTAATT CCACAATTCC TGTCTAGCCT GGTCTACATA
  GTGGGTTCTA GGCCAGCTGT GGCTACATAA TGAGACCTTG TCTCAAAAAA AAAAAGCAAG
  M
  CAAACGTAGA GATGAGGGGT GTGAGGAGGG AAGTAGGTCG GTAGGTAGAA CACGTGCAGA
  AGACCCACAA GGGTTATTTC CCATCTTTCT TCCTATAGAC ATTGTGTTGT ATCTGTCTTC
  TTTGCTTCCA AAGGGCAGGT TGTGGGCTGT GTGTGTGTGT GTGTGTAGAG ATGGCACGTT
  GGGTGCAGGC TCCTGACCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331999	CHEV_4_131818304	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250124818					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	547 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	787 bp upstream
Rr600911	regulatory region 600911	1851 bp distal
Rr600912	regulatory region 600912	879 bp distal
Rr600913	regulatory region 600913	297 bp distal
Rr600914	regulatory region 600914	479 bp proximal
Rr600915	regulatory region 600915	674 bp proximal
Tssr39362	transcription start site region 39362	1872 bp downstream
Tssr39363	transcription start site region 39363	1851 bp downstream
Tssr43650	transcription start site region 43650	817 bp upstream
Tssr43651	transcription start site region 43651	767 bp upstream