rs250111617 SNP Detail

Summary

• ID
  rs250111617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGATTTC CTCTCACTAA
  CCAAAGCTTT TGTATCTGAA TCCTGCTGCC CCAGCTGTGC CGCCTAAACA AACACATTCA
  GAGCACACAG AAGCTGGGCC AAGATATGTC CACTTCACCT TAGAAAGTAC CATTCCATTA
  CAGGCCATTT TAAGAACTAC TTTGGGCCCT TCTTTCTTCA CACAATAAAC ATACATAAGA
  Y
  GGCTGGGGAT GTAGGTCAGT GGTAGAACTA CATGCCTGGC ACACACAAGG CCCTGGAATT
  TAAGCACCAG AATCAAAGAG CTTCCTGTCT GAGACATACA TGAGGTTTGC TTTGCACTTC
  CATGGAGCAG TCTGTGAGGT AAATTGGCTT GGGGGATTTT TAACTCATCC AAACGATTGG
  CAAAACACGA AACTAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863270	CHEV_3_105617126	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250111617					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721524 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1359 bp upstream
Rr582787	regulatory region 582787	867 bp proximal
Rr582788	regulatory region 582788	1382 bp proximal
Rr582789	regulatory region 582789	1925 bp proximal
Tssr31084	transcription start site region 31084	1322 bp upstream