rs249990574 SNP Detail

Summary

• ID
  rs249990574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101217663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATGCAA AGAGCTTCCC
  TCTCTGAAGA GTGAAAAGTT GCCTTCTCAC ACCAATGAAG AAACTCAATC GAATTGGCGT
  GCTTCTGTGG TTTAAAAAAA AAAAAAGCAG TTTCTCAGCA GGTTCCTTTC ACCCTGTGAG
  AAGCATCCCA GTTGTGTCGT TGACGAGCTC TTGGAGAAAC GTAGTTAATA GGAAGCCCTT
  Y
  TAGTTGTTAA TTAATTAAAA CACTTTAATC AAGAATCATT TTCTAAGGAA CTTGTTCCCA
  GCCCTGAGTC AGGTGCTAAG AAACACGAAC GATGAAGATA AGGACTTTGC TCTGGAAGAA
  CTCACACTCC AGTTGTACTT TATTAAACAA GTGTTTATTC ATTATCCACC AGGAGGAATT
  CAGTAATGGA TAAGACACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229526	CHEV_4_101033071	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249990574					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101217663 () rs orientation: forward

Symbol	Name	Function Class
0610043K17Rik	RIKEN cDNA 0610043K17 gene	within coordinates
Gm12795	predicted gene 12795	1711 bp downstream
Rr596131	regulatory region 596131	1625 bp distal
Rr596132	regulatory region 596132	1002 bp distal
Rr596133	regulatory region 596133	1499 bp proximal