rs249934351 SNP Detail

Summary

• ID
  rs249934351
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC CTCTTCCTTG TCTTTTACTC
  T
  CATCTCTCCT CTGGGCTCTG AAGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320835498	CHEV_3_87719938	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249934351					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823323 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	mRNA-UTR
Rr579572	regulatory region 579572	1163 bp proximal
Tssr29850	transcription start site region 29850	1071 bp downstream
Tssr29851	transcription start site region 29851	936 bp downstream
Tssr29852	transcription start site region 29852	921 bp downstream
Tssr29853	transcription start site region 29853	833 bp downstream
Tssr29854	transcription start site region 29854	689 bp downstream
Tssr29855	transcription start site region 29855	504 bp downstream
Tssr29856	transcription start site region 29856	468 bp downstream
Tssr29857	transcription start site region 29857	444 bp downstream
Tssr29858	transcription start site region 29858	413 bp downstream
Tssr29859	transcription start site region 29859	381 bp downstream
Tssr29860	transcription start site region 29860	233 bp downstream
Tssr29861	transcription start site region 29861	211 bp downstream