rs249777117 SNP Detail

Summary

• ID
  rs249777117
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17080809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATGTAT AATTGGGTAT
  GCTCATATAT TTCTTGAGAA AGAGAATGGG GTCTGGGGAA TTTAAAAGAA GGCATTCTCT
  ATCCTGAGTT TGGGAAGACT TTCCTGGTCC TGAGAGAGTG AACAACCAAC ATATTGAGAA
  GGAAATTATT TACAGGGAAG GAACAAAGGT CTGCTTTAGT GTGGGATTTG AGTGAAGAGT
  W
  TTGATAGAAA AGAAAAACGT GAAAAATGAA AGCAAGGTGC CAGTAATCCC TGCTTGTGCC
  CATATTTACA GCACATCTCC TGCATCACAA ATCATTTTGT CATTTCAGTG GAACTATGGA
  CACCAAACAA GGTGATTTAT GGGAAATACT TCGAGCTGTG CCTGGCAGTG CAGATGCTTG
  CTGCTGTTCC CACTACAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321753472	CHEV_6_17030810	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249777117					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17080809 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626761	regulatory region 626761			512 bp distal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant