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rs249777117 SNP Detail
Summary
  • ID
    rs249777117
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr6:17080809 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGTATGTAT AATTGGGTAT
    GCTCATATAT TTCTTGAGAA AGAGAATGGG GTCTGGGGAA TTTAAAAGAA GGCATTCTCT
    ATCCTGAGTT TGGGAAGACT TTCCTGGTCC TGAGAGAGTG AACAACCAAC ATATTGAGAA
    GGAAATTATT TACAGGGAAG GAACAAAGGT CTGCTTTAGT GTGGGATTTG AGTGAAGAGT
    W
    TTGATAGAAA AGAAAAACGT GAAAAATGAA AGCAAGGTGC CAGTAATCCC TGCTTGTGCC
    CATATTTACA GCACATCTCC TGCATCACAA ATCATTTTGT CATTTCAGTG GAACTATGGA
    CACCAAACAA GGTGATTTAT GGGAAATACT TCGAGCTGTG CCTGGCAGTG CAGATGCTTG
    CTGCTGTTCC CACTACAATC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321753472 CHEV_6_17030810 CHEVERUD SCREENING_POP f SNP T A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs249777117 SNP T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:17080809 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm4876 predicted gene 4876 within coordinates
Rr626761 regulatory region 626761 512 bp distal
Tes testin LIM domain protein Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory