rs249581121 SNP Detail

Summary

• ID
  rs249581121
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116325620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAGTGA CATGGGGATT
  ATACTCCTTC CATAGGGTCC TTGTGAAATT AACTGAGTTA TGGTAGGCTA GAATCTATGT
  ATAAGAGCAC ACACTAGCTA TTGACATTTG ACCTAGGTAT TTATTGTAGT GAAGAGTAAG
  TATAAAAATG CAATTTATTA CAAAATTTAA TTTTTAAAAA CTTATCACCT TTTTTTTTTT
  W
  AAAAAATCAC CACAAAACTT TGAGAGATTG CAGTTCTGTT ACATAATATT TTACTGTGTG
  GTACAACTCT GAGGGCTGGA CCCAGAATCT CCAGTTCACC TGCAGCTTTC CCAAGTGGCT
  GCTTGTGCAC TGTCAGGTCT TGCCTTTCTT TCTGCCTCAT TGTGTATGTG TACCTGTGTG
  TCTCTGTTGT ACTTGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369770915	MGP_WTSI_6_116298677	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	A	A	A	T	A	A	A	A	A	A	A	T	T	T	A	A	T	A	T	T	T	A	A	A	A	T	A	A	T	A	A	T	A	A	A	T	A	A	A	A	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249581121					SNP	T	T	A	A	A	A	A	T	A	A	A	A	A	A	A	T	T	T	A	A	T	A	T	T	T	A	A	A	A	T	A	A	T	A	A	T	A	A	A	T	A	A	A	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369770915	MGP_WTSI_6_116298677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116325620 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Marchf8	membrane associated ring-CH-type finger 8			Intron
				mRNA-UTR
Rr637191	regulatory region 637191			404 bp distal
Rr637192	regulatory region 637192			806 bp proximal