rs249511530 SNP Detail

Summary

• ID
  rs249511530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTACAAT GTGGCAGAAG
  CACTGTTTAA GTGAAAACTG TTAATAAAAA TGATTAAGCT TACCATAATT GTTTCAAGTG
  CATGCTGTAC ATTGTTCATA ATGTAAGAAA CGCCGCTCCT AAATTTCTGT AAGAGGGGAG
  GTCATTAGAA GACTCTTAGC TGTCACACAG GCACCCAATG ATGAGGGGTT CAGCTCTGCA
  R
  CTGAACATTC AGAATAACAG TAGTACCACA CAGAGGAAAT GTCACAGTCA CGGGGCTTAG
  TACTCTTGTG GAATACAGAA ACACAAAGAT ACTTTCTGTA TAATTATTTT CTGGTAGTGG
  CATTAAACCC AGGGCTTTAA AAAATACTTC TAGTGGTACA TTAACTTATA GCATAACAGT
  GGATGGTATA GTGTTTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LP/J	RIIIS/J	SM/J	SPRET/EiJ
ss360024906	MGP_WTSI_3_142282282	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LP/J	RIIIS/J	SM/J	SPRET/EiJ
rs249511530					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024906	MGP_WTSI_3_142282282	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325079 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1345 bp upstream
Gbp2b	guanylate binding protein 2b	139 bp downstream
Gm54185	predicted gene, 54185	36 bp upstream
Rr398088	regulatory region 398088	564 bp upstream
Rr586457	regulatory region 586457	342 bp distal
Rr586458	regulatory region 586458	794 bp proximal
Rr586459	regulatory region 586459	1295 bp proximal
Tssr32216	transcription start site region 32216	1133 bp downstream
Tssr32217	transcription start site region 32217	1095 bp downstream
Tssr32218	transcription start site region 32218	1041 bp downstream
Tssr32219	transcription start site region 32219	1004 bp downstream
Tssr32220	transcription start site region 32220	990 bp downstream
Tssr32221	transcription start site region 32221	972 bp downstream
Tssr32222	transcription start site region 32222	916 bp downstream
Tssr32223	transcription start site region 32223	859 bp downstream
Tssr32224	transcription start site region 32224	805 bp downstream
Tssr32225	transcription start site region 32225	467 bp downstream
Tssr32226	transcription start site region 32226	427 bp downstream
Tssr32227	transcription start site region 32227	1278 bp upstream
Tssr32228	transcription start site region 32228	1329 bp upstream
Tssr32229	transcription start site region 32229	1368 bp upstream
Tssr32230	transcription start site region 32230	1404 bp upstream
Tssr32231	transcription start site region 32231	1421 bp upstream
Tssr32232	transcription start site region 32232	1955 bp upstream
Tssr35947	transcription start site region 35947	137 bp upstream