rs249440205 SNP Detail

Summary

• ID
  rs249440205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155686516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT GCATAAACTC CAGTGGCAGC
  Y
  CCAGAACTGA ACCCCATCGG GGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442495	CHEV_4_154976168	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249440205					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155686516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B930046K06Rik	RIKEN cDNA B930046K06 gene			203 bp upstream
Cpgi15473	CpG island 15473			within coordinates
Rr398921	regulatory region 398921			594 bp downstream
Rr606514	regulatory region 606514			438 bp distal
Rr606515	regulatory region 606515			214 bp distal
Rr606516	regulatory region 606516			370 bp distal
Rr606517	regulatory region 606517			105 bp distal
Rr606518	regulatory region 606518			within coordinates
Rr606519	regulatory region 606519			750 bp proximal
Rr606520	regulatory region 606520			1775 bp proximal
Slc35e2	solute carrier family 35, member E2			Intron
				mRNA-UTR
Tssr40681	transcription start site region 40681			782 bp downstream
Tssr40682	transcription start site region 40682			646 bp downstream
Tssr40683	transcription start site region 40683			616 bp downstream
Tssr40684	transcription start site region 40684			119 bp downstream
Tssr44954	transcription start site region 44954			767 bp upstream
Tssr44955	transcription start site region 44955			218 bp upstream