rs249403188 SNP Detail

Summary

• ID
  rs249403188
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCGTTAT TCCTCACAGT
  GTTTGCCGCC CATTATGGTT TCATATTGCT TGTCTGAATG CTCTCACCTA AAGGTAAAAA
  TTGTTATGAG GGCAGGGACT TGTCTGCTCT TATCCTCTGG AGTTCCAACA GGTAAAACAA
  TACCTGCCAA AAATGACTGT TTGTTGAGTA AGTGACAGAG GAAGGGTGTG ATGTACCCGG
  K
  TTACAGAATG ATACAAAATT CTGTGCGAAA AGAATGACTA AAAGGTTTGC TGGAAACTTC
  CTTGCCTCTC AGTAGAGGGG TCTACTGATC TGGCTTCCTC ATACCTGGTC CTGGCTGAGT
  CACTGACACA GGCTGGTGTG CAAAGCTTCC TTGCTTATCA GCTTATATCT TGGTGAAGCA
  GCATTAGGAA CCTATGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362616184	MGP_WTSI_4_101179983	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249403188					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362616184	MGP_WTSI_4_101179983	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14502	CpG island 14502	1516 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	within coordinates
Rr596168	regulatory region 596168	986 bp distal
Rr596169	regulatory region 596169	804 bp distal
Rr596170	regulatory region 596170	3 bp proximal
Rr596171	regulatory region 596171	284 bp proximal
Rr596172	regulatory region 596172	633 bp proximal
Rr596173	regulatory region 596173	1819 bp proximal
Tssr37997	transcription start site region 37997	99 bp upstream
Tssr37998	transcription start site region 37998	383 bp upstream
Tssr37999	transcription start site region 37999	406 bp upstream
Tssr38000	transcription start site region 38000	477 bp upstream
Tssr38001	transcription start site region 38001	553 bp upstream
Tssr38002	transcription start site region 38002	569 bp upstream
Tssr38003	transcription start site region 38003	721 bp upstream