rs248923331 SNP Detail

Summary

• ID
  rs248923331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123180323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGGGCT GAGGCAGGAG
  GACCCAGGAG TTTGGAGCCT AGGCTATGTA ATGAAACCCT GTCATTCACT CATTTATATA
  AATAAATAAA CAAACAAATA AATAAATAAA TGCAAGCAAA CATAGCGGTA GTTACGTAGT
  GAAACCCTGT CATTCATAAA CACACAAACA GAGCGGGCAG CGCTGAAACC CTGTCATTCA
  Y
  TCATTTATAT AAATAAATAA ATAAATAAAT AAATAAATAA ATAAATAAAT GCAAGCAAAC
  ATAGCGGTAG TTACGTAGTA AATAAATAAA TAAATAAATA AATGCAAGCA AACATAGCGG
  TAGTTACGTA GTAAATAAAT AAATAAATAA ATAAATAAAT AAATAAATAA ATGCAAGCAA
  ACATAGCGGT AGTTACGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359526198	MGP_WTSI_3_123089592	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	C	C	C	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248923331					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	C	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359526198	MGP_WTSI_3_123089592	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123180323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	606 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	684 bp upstream
Rr397990	regulatory region 397990	621 bp downstream
Rr584510	regulatory region 584510	754 bp distal
Rr584511	regulatory region 584511	76 bp distal
Tssr35499	transcription start site region 35499	1002 bp upstream
Tssr35500	transcription start site region 35500	681 bp upstream
Tssr35501	transcription start site region 35501	664 bp upstream