rs248904859 SNP Detail

Summary

• ID
  rs248904859
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138186493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTCACA ACACAGCTCA
  CAGTGACAGG AGCTTGAGTA TGACTCAGAC ATCAGGTAAG AGTCCCCACG GGGTGGGGTG
  GGGGGACTGC AGAAGAGGAG CTCCAGGGGG CCCCAGGGAA AGGAGGGCAA ATGTCTTATC
  CCCCTTCTTA AGTCTGACAG CCTCAGCAGG TCCCAGCCTG GGGTTCTTCA TCCTGTGGTC
  M
  TTACTGGGAC TGATGGGGGA GCTGGAACTG GCAGTGCCCA GCCTGCGGAT GCAAGCGGAT
  GCCAACTTCA TTTCCCCAGG CGCACAGTCC TCTTCTTGAA TCTGGCTGTC TTCCCTCTTG
  ACCCCAGGCA CTCCCTTTTG GACTTGAAGG TCTATAGGCT CCATTAGAGC CAAGAAATGC
  AATGTACTGC TCCCCTCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321373811	CHEV_4_138015097	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248904859					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138186493 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Rr377275	regulatory region 377275	808 bp downstream
Rr602934	regulatory region 602934	647 bp proximal
Rr602935	regulatory region 602935	723 bp proximal
Tssr39866	transcription start site region 39866	1802 bp downstream
Tssr39867	transcription start site region 39867	1563 bp downstream
Tssr39868	transcription start site region 39868	1493 bp downstream
Tssr39869	transcription start site region 39869	1265 bp downstream
Tssr39870	transcription start site region 39870	1236 bp downstream
Tssr39871	transcription start site region 39871	1180 bp downstream
Tssr44169	transcription start site region 44169	1939 bp upstream
Tssr44170	transcription start site region 44170	737 bp downstream