rs24884358 SNP Detail

Summary

• ID
  rs24884358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149057723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTCGC GTTAAGAACA
  TTTTATTGCC CCCTGGTTTT CATTATTAAT GAAAAGGGAC CAGAATGATC TTTCCTAAAG
  TTCAGAGAGT CTATAAAGAC TAGAAGCTGA AATGCCATTT TACTCGTTTT AGAGATGTGT
  GATACAATTC TGTCTGCGGC AAAATGAAGA GAGGAAAAAC TCAGATGCAA AAGCCTTTCC
  Y
  ACTGCACGGC TTCAAGGGTA AGAGGGTCCA CTCAAGCCCT CACACTGGGT CACTCCTCAG
  TTCCCACCAT CTGCCTCCTG CCTGCAGCCC ACTCTGAGAA CAAACAGGCT TTCCCGAGTG
  CAGTGGACTC TCCTCACCGC ACTCCTGAGT CTGGAAGCAA CCACAGGGCC AGCAACTTGC
  CGGCTCCAGT TGGGAAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss32476397	NES05012283	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs24884358					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss32476397	NES05012283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149057723 () rs orientation: forward

Symbol	Name	Function Class
Gm17029	predicted gene 17029	within coordinates
Pex14	peroxisomal biogenesis factor 14	Intron
Rr604811	regulatory region 604811	1321 bp distal
Rr604812	regulatory region 604812	1561 bp proximal