rs248825664 SNP Detail

Summary

• ID
  rs248825664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138920156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGA GCTGGCGGCT GGGGGGCGGG
  Y
  CGGGCTGGCC GGGGCGGGGA AGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss917107651	MGP_WTSI_4_139192845	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	C	C	T	C	C	T	T	T	T	C	T	C	C	T	C	C	T	C	T	T	T	C	C	C	C	T	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248825664					SNP	T	T	C	T	C	C	T	C	C	T	T	T	T	C	T	C	C	T	C	C	T	C	T	T	T	C	C	C	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917107651	MGP_WTSI_4_139192845	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138920156 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta	54 bp upstream
Cpgi15162	CpG island 15162	within coordinates
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	139 bp distal
Rr603134	regulatory region 603134	within coordinates
Rr603135	regulatory region 603135	90 bp proximal
Rr603136	regulatory region 603136	252 bp proximal
Tssr39900	transcription start site region 39900	72 bp upstream
Tssr39901	transcription start site region 39901	97 bp upstream
Tssr39902	transcription start site region 39902	121 bp upstream
Tssr39903	transcription start site region 39903	389 bp upstream
Tssr39904	transcription start site region 39904	434 bp upstream
Tssr39905	transcription start site region 39905	464 bp upstream
Tssr39906	transcription start site region 39906	1241 bp upstream
Tssr44214	transcription start site region 44214	377 bp upstream
Tssr44215	transcription start site region 44215	208 bp upstream
Tssr44216	transcription start site region 44216	187 bp upstream
Tssr44217	transcription start site region 44217	127 bp upstream
Tssr44218	transcription start site region 44218	1151 bp downstream