About   Help   FAQ
rs248644256 SNP Detail
Summary
  • ID
    rs248644256
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:51467917 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGCGGGGCCC CATTCCCCGC
    CCCTGCCCCG CCGCGCCCCG CACGCTCCCG GCGGCGTGGC GTAGGCAGTG CAGCCCCCGC
    CTGAGCCGAG CGACCCGCCA TCCGCTTAGG GACCGCGGCG GCCTTCGGCT CGGCCCGGCG
    CGCGTCGCAG ACCGCCACTC TTTTGGCGCT TTCCGCCCCA GGCGCCTGTC CCCACCCCAG
    R
    GTCCTGGAGA AAAGCTTGTA CCTTCCACGG CTTCCTCCAC CACCTCATCG TCGCTATCCA
    TGGCGGCTGA GACCCTACCC AGCCCGGGGC CGTGCGGCCG GCTCCCGTCC CTCTGGGTGC
    TCCTGGTGGC TGAGCGAGCG CTGGAGCTAA GCCCTGCGAG TTTGGAGGAG GGGGAGGAGG
    GGGAGGAAGA GGAGGAGCAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss357933017 MGP_WTSI_3_51364418 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs248644256 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357933017 MGP_WTSI_3_51364418 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:51467917 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
5031434O11Rik RIKEN cDNA 5031434O11 gene within coordinates
Cpgi13142 CpG island 13142 within coordinates
Gm38200 predicted gene, 38200 844 bp upstream
Rr397660 regulatory region 397660 675 bp downstream
Rr576339 regulatory region 576339 451 bp distal
Rr576340 regulatory region 576340 within coordinates
Rr576341 regulatory region 576341 216 bp proximal
Rr576342 regulatory region 576342 373 bp proximal
Rr576343 regulatory region 576343 779 bp proximal
Rr576344 regulatory region 576344 895 bp proximal
Setd7 SET domain containing (lysine methyltransferase) 7 Intron
Noncoding-Transcript-Variant
Tssr29063 transcription start site region 29063 715 bp downstream
Tssr29064 transcription start site region 29064 520 bp downstream
Tssr33224 transcription start site region 33224 899 bp upstream
Tssr33225 transcription start site region 33225 863 bp upstream
Tssr33226 transcription start site region 33226 99 bp downstream
Tssr33227 transcription start site region 33227 305 bp downstream
Tssr33228 transcription start site region 33228 320 bp downstream
Tssr33229 transcription start site region 33229 1286 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory