rs248635121 SNP Detail

Summary

• ID
  rs248635121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115594592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gctaaatct ggcaactcta TACAGAAAGG
  AAAACACAtt ggttattgtg tttatggcag catccccaga gctagaatag tctcgatatt
  tcaccaccag taaatattta ttggatggat gggtgggtgg gtggatagat ggatagatgg
  R
  tggagggatg gatggaagga cggatgaatT ATTCAACTGG GCCATTAAAA CAATGAGCCT
  AAAGAACCTA AGAGTAAGAG GGATGGAGTC TTTCAAGAAC TTTTCAGAAG GTGGAGCCTC
  GGGTGCCAGT CCCCGCCCCT GCTTCTCAGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321276233	CHEV_4_115410000	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248635121					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115594592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14611	CpG island 14611	70 bp proximal
Cpgi14612	CpG island 14612	1283 bp proximal
Efcab14	EF-hand calcium binding domain 14	349 bp upstream
Rr597763	regulatory region 597763	within coordinates
Rr597764	regulatory region 597764	100 bp proximal
Rr597765	regulatory region 597765	286 bp proximal
Rr597766	regulatory region 597766	565 bp proximal
Tssr38464	transcription start site region 38464	343 bp upstream
Tssr38465	transcription start site region 38465	359 bp upstream
Tssr38466	transcription start site region 38466	428 bp upstream
Tssr38467	transcription start site region 38467	1018 bp upstream