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rs248446736 SNP Detail
Summary
  • ID
    rs248446736
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:106945699 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAGTGGGCT GCATTCTCTC
    AGCTCTTTTT TTCTCTCTCT CCCTGTCTCT TAATTTTGTG ACCAACAAAC TTACATTAAG
    CGTGGTTTTT TTGTGTGAGC CCTACAGCCA CATCCTGAGA GGAAGTGAAA CTATAGAGTC
    AGAGTAACTG TTTAACCTCA AAATCAAAAG ATAGTTGTTT CTTTACTAAG TAAAGGAGGC
    R
    GAACCTAAAT GAAGCTCCTG ACTGGTGGAC TTTTCAATAT TATTTCCGGA CTAGTTATTG
    TAACTACCTA ACCTCTGGAT ATGTGGGTGG AAAGTCTAAC TAGAGCGTTG ACGCGTAAGC
    CCACTATAAA TTTATTTTGT TTTTGACTGA TCTTTCAGTT TGAATCTCTC CCCTAAGGAC
    TTAAGGTTCA CAATAATTTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359136884 MGP_WTSI_3_106841301 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248446736 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359136884 MGP_WTSI_3_106841301 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:106945699 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
AI504432 expressed sequence AI504432 1121 bp upstream
Cpgi13669 CpG island 13669 927 bp distal
Gm56792 predicted gene, 56792 75 bp upstream
Kcna3 potassium voltage-gated channel, shaker-related subfamily, member 3 mRNA-UTR
Rr397927 regulatory region 397927 within coordinates
Rr397928 regulatory region 397928 451 bp upstream
Rr582886 regulatory region 582886 1692 bp distal
Rr582887 regulatory region 582887 786 bp distal
Rr582888 regulatory region 582888 within coordinates
Rr582889 regulatory region 582889 584 bp proximal
Tssr31149 transcription start site region 31149 544 bp upstream
Tssr35008 transcription start site region 35008 321 bp upstream
Tssr35009 transcription start site region 35009 48 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory