rs248240559 SNP Detail

Summary

• ID
  rs248240559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107544607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTGATG CCAGGGTGCA
  GAGTCGGCCT TGATTTTCTC CTTTGAGTCT TTGATTGCAA CTCTCTGGTG TCCGTGTTCC
  TGTCGTAGTG TTCCCTCCCC CTCTCGGTTC CCCGTGCGCC GCACCCCCTC CCCCCACCTG
  GGGCTAAGAA GTTGTTACCA TTCTGGGCTC ATTAGACTCT TGAAAGTTGC GAGGGGCGGG
  R
  GTGGGGGGGG TGGGGGGGGG TGGGGGTGGG GGAAGGTTCA TAAAACTTTG CTTGTTTAAA
  AAAGTTTTCC TCATTTCTGA AAGTGGGCAA GAGCGTATTC ACTGGGTTGT CATTTCAGGA
  ATTTTACAGG AAACTGGCAC CATTCAAAGA GTCTAAGTTT TAGATAGGAA GTGACTTTAA
  TCCCAACATA CGGACCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SWR/J
ss362765661	MGP_WTSI_4_107360015	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SWR/J
rs248240559					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362765661	MGP_WTSI_4_107360015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107544607 () rs orientation: forward

Symbol	Name	Function Class
Gm12899	predicted gene 12899	718 bp upstream
Rr376978	regulatory region 376978	23 bp upstream
Rr597042	regulatory region 597042	591 bp proximal
Tssr38260	transcription start site region 38260	1079 bp upstream