rs248227262 SNP Detail

Summary

• ID
  rs248227262
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110159442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATGTTT CCCTCACAGG
  ACCTCCCCCG CCCCCCACTA CTGAATTATG TGGCACAGTT CTTGTCCCTT CTCTGACAGT
  TGTAACTCAC CAAACTCTCT GTTCTAACCA GAGTTAGGAT ACAAAGAATA TGTATGACGC
  AAAGTGAAAA CCAAATAATA CAAGATCTTG ATTCTGAGTC CAAAGTGATC CCTGAGGTAC
  K
  TTAAGCTCCA GGGCAAATAC TGAAGAAGTG CTGTGGCCAT GAAATGTATC AGCCACCACT
  GTGTCTCTGG AGAATAGTTT ACTTGGTCTT GAGTCCTGTT CTGAAACTTC TGTAGTTCAA
  ACTAAAGAAC AATTAACATC AAGGGTATGA TATTCTCAAA CCCATTTCCA GTGTCTTTGG
  TGACCAGCTT ATATATACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359207495	MGP_WTSI_3_110055044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248227262					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359207495	MGP_WTSI_3_110055044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110159442 () rs orientation: forward

Symbol	Name	Function Class
C130013H08Rik	RIKEN cDNA C130013H08 gene	within coordinates
Cpgi13720	CpG island 13720	962 bp distal
Prmt6	protein arginine N-methyltransferase 6	1128 bp upstream
Rr397950	regulatory region 397950	950 bp downstream
Rr583472	regulatory region 583472	1500 bp distal
Rr583473	regulatory region 583473	1029 bp distal
Rr583474	regulatory region 583474	404 bp distal
Tssr31306	transcription start site region 31306	1948 bp downstream
Tssr31307	transcription start site region 31307	1922 bp downstream
Tssr35241	transcription start site region 35241	1111 bp upstream
Tssr35242	transcription start site region 35242	745 bp upstream