rs248048484 SNP Detail

Summary

• ID
  rs248048484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148214425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAAAGGG ACAAGCAGCA
  GTAGCAAGGG TCACTGCCTG AAAGAGTGAA GGCCAAGAGA GTACCCAGCT GAGATGCCCA
  GACAAAACTT GTTAGGGAAA CCCAGGAACA CTCACTCCTT AAACACAAGC TCTGGCTCCG
  GAAGGCAGCT GAGCCCTTGT GTCTGAAAAG CCTCATGGTG GGAAAAGCCC AAGCCATCCC
  R
  GAGAATGGAA CTAGGTGCCC TCGAGGCGTA AAGCAAACAC TAGTCCAGCC CCAATGGGGA
  AAAAAAATGT GAGGCCAGGC TATGCCAGTT TTGGGTGAGT TTAGCGTCCC GAACACACCC
  AGCCTCCGGG GGGCGTCGTT GAAAGGGACA GAGGCGCCCT GGTCAGCTTT GCCCCCACTC
  AGGCAGTCTC TGGAGACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417521	CHEV_4_147504077	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248048484					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148214425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15291	CpG island 15291	104 bp proximal
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	416 bp upstream
Rr604596	regulatory region 604596	within coordinates
Rr604597	regulatory region 604597	119 bp proximal
Rr604598	regulatory region 604598	720 bp proximal
Rr604599	regulatory region 604599	958 bp proximal
Tssr1378	transcription start site region 1378	865 bp upstream
Tssr40251	transcription start site region 40251	774 bp upstream
Tssr40252	transcription start site region 40252	807 bp upstream
Tssr40253	transcription start site region 40253	915 bp upstream
Tssr44585	transcription start site region 44585	670 bp downstream
Tssr44586	transcription start site region 44586	683 bp downstream
Tssr44587	transcription start site region 44587	710 bp downstream