rs248032098 SNP Detail

Summary

• ID
  rs248032098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113410546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atgtctaac aagtccccaa actgtcagtg
  ttgtctggtt cttggactaG CCACATTCCC CTCTGGGCTA CTCTGCTCTG TGGCCTTGTT
  CAGTTCGCTG TAAAGTTGGG TAAAATGGGG GAGGCAGCCT ATAGAGTATT TTTGGACACT
  Y
  GGATCCATGG GGTAGAAAAA AAGGAGCAGA GAGGATGTGA GTCTGGGGCT TTCTGGGTTC
  AAgttcaaag tttgtctttg ctacagagtt gctaggcgac aggtgacaga atgctcagct
  tgccagtttc cccatctatt gacttgacat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910858	CHEV_6_113383579	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248032098					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113410546 () rs orientation: forward

Symbol	Name	Function Class
Cidec	cell death-inducing DFFA-like effector c	Intron
Gm52871	predicted gene, 52871	1297 bp upstream
Rr636516	regulatory region 636516	1169 bp proximal
Tssr58211	transcription start site region 58211	1307 bp upstream
Tssr62446	transcription start site region 62446	1594 bp upstream
Tssr62447	transcription start site region 62447	914 bp downstream
Tssr62448	transcription start site region 62448	944 bp downstream
Tssr62449	transcription start site region 62449	1172 bp downstream
Tssr62450	transcription start site region 62450	1192 bp downstream
Tssr62451	transcription start site region 62451	1215 bp downstream