rs247963714 SNP Detail

Summary

• ID
  rs247963714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTCTAA CAGGTACTCA
  CCTCGTAGAT GGCAGAGAGA TCCATGGTGG CGCGAATGGC CTTGGTGAAG AGACCGACTG
  TCGGTTCGCA GAAGTCAGGC TGTGGCCCGC AGCAGGAGCT TTCTCCTTTT ATGGGGCGGC
  CTGGGGGCGT GGCCACTAGA GCTTCCGGGA CGCGCCCCCG CGGCGTAGCT CGGCCGGCCT
  R
  GTACTAGGCC CCTTCCGCCT ATCTGCTGGT TAGCATGCAA AATGTGCCTG AACTTGGCCC
  TCCCGCAGCT CCGGCCCCTC TCGGGGGGTA GTAGGGAGGG TTGTGTACGA CCAACTGGAG
  GTGATGGTAG CGGGGCGTCC TAGTGTTTTT CAGAGGTGGA AGGCAGTCGG GAAGAGAACT
  GGGGCAGAAG TGGGGGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858540	MGP_WTSI_7_29164372	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247963714					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858540	MGP_WTSI_7_29164372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078778 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	1059 bp downstream
Gm73795	predicted gene, 73795	1896 bp upstream
Rr368284	regulatory region 368284	1181 bp upstream
Rr400210	regulatory region 400210	within coordinates
Rr644240	regulatory region 644240	1399 bp distal
Rr644241	regulatory region 644241	363 bp distal
Rr644242	regulatory region 644242	109 bp distal
Rr644243	regulatory region 644243	within coordinates
Rr644244	regulatory region 644244	777 bp proximal
Rr644245	regulatory region 644245	890 bp proximal
Rr644246	regulatory region 644246	1406 bp proximal
Rr644247	regulatory region 644247	1907 bp proximal
Tssr2163	transcription start site region 2163	3 bp downstream
Tssr2164	transcription start site region 2164	136 bp downstream
Tssr2165	transcription start site region 2165	179 bp downstream
Tssr65463	transcription start site region 65463	1858 bp downstream
Tssr65464	transcription start site region 65464	1300 bp downstream
Tssr65465	transcription start site region 65465	within coordinates
Tssr65466	transcription start site region 65466	1906 bp upstream
Tssr65467	transcription start site region 65467	1930 bp upstream
Tssr71496	transcription start site region 71496	1722 bp upstream
Tssr71497	transcription start site region 71497	1474 bp upstream
Tssr71498	transcription start site region 71498	1413 bp upstream
Tssr71499	transcription start site region 71499	1319 bp upstream
Tssr71500	transcription start site region 71500	1295 bp upstream
Tssr71501	transcription start site region 71501	1268 bp upstream
Tssr71502	transcription start site region 71502	1243 bp upstream
Tssr71503	transcription start site region 71503	1202 bp upstream
Tssr71504	transcription start site region 71504	1171 bp upstream
Tssr71505	transcription start site region 71505	1154 bp upstream
Tssr71506	transcription start site region 71506	1140 bp upstream
Tssr71507	transcription start site region 71507	1093 bp upstream
Tssr71508	transcription start site region 71508	1059 bp upstream
Tssr71509	transcription start site region 71509	999 bp upstream
Tssr71510	transcription start site region 71510	955 bp upstream
Tssr71511	transcription start site region 71511	919 bp upstream
Tssr71512	transcription start site region 71512	839 bp upstream
Tssr71513	transcription start site region 71513	252 bp upstream
Tssr71514	transcription start site region 71514	118 bp upstream
Tssr71515	transcription start site region 71515	90 bp upstream
Tssr71516	transcription start site region 71516	928 bp downstream
Tssr71517	transcription start site region 71517	1574 bp downstream
Tssr71518	transcription start site region 71518	1596 bp downstream
Tssr71519	transcription start site region 71519	1617 bp downstream
Tssr71520	transcription start site region 71520	1661 bp downstream
Tssr71521	transcription start site region 71521	1673 bp downstream
Tssr71522	transcription start site region 71522	1715 bp downstream
Tssr71523	transcription start site region 71523	1939 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR